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Biognosys spectronaut software suite
Spectronaut Software Suite, supplied by Biognosys, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/spectronaut+software+suite/spectronaut/us12600770-747-44-48
Average 86 stars, based on 1 article reviews
spectronaut software suite - by Bioz Stars, 2026-10
86/100 stars

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Related Articles

Software:

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging
Article Snippet: .. All statistical analyses were performed using R (version 4.3.1) and the Spectronaut software suite (version 18.4.231017.55695, Biognosys). ..

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging.
Article Snippet: .. All statistical analyses were performed using R (version 4.3.1) and the Spectronaut software suite (version 18.4.231017.55695, Biognosys). ..

Article Title: SARS-CoV-2 hijacks p38β/MAPK11 to promote virus replication
Article Snippet: .. All raw mass spectrometry data generated in this study were analyzed by the Spectronaut software suite (Biognosys) ( ). .. DDA-MS data were analyzed to build a spectral library by searching against a protein sequence database composed of SwissProt human sequences (downloaded on 10 October 10, 2019) and SARS-CoV-2 strain USA/WA1/2020 sequences using Biognosys factory settings, which considered a static modification for cysteine carbamidomethylation and variable modifications for methionine oxidation and protein N -terminal acetylation.

Article Title: Antibodies to connective tissue growth factor (CTGF) and uses thereof
Article Snippet: .. MS1 resolution is set to 120,000, AGC target to 2E6 with a maximum injection time of 60 ms. MS2 resolution is set to 15,000, AGC target to 2E6 with a maximum injection time of 22 ms. Mass spectrometry raw data are processed within the Spectronaut software suite (v17.4, Biognosys AG, Schlieren, Switzerland) utilizing the directDIA search algorithm with standard settings. ..

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging.
Article Snippet: .. Mass spectrometry data analysis The resultingDIAmapswere analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys)withmodified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies. ..

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging
Article Snippet: .. The resulting DIA maps were analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys) with modified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies , . ..

Article Title: Golgi-IP, a tool for multimodal analysis of Golgi molecular content
Article Snippet: In addition, these data were also searched with the Pulsar search algorithm using Biognosys software suite to construct a hybrid library. .. Database search of DIA data and Data analysis DIA datasets from GolgiTAG-IP, ControlTAG-IP and their whole-cell extracts were imported into the Spectronaut software suite (Version Rubin: 15.7.220308.50606: URL: https://biognosys.com/software/spectronaut/) (6) for library free search or direct DIA to create a search archive using Pulsar search algorithm. .. Database search of DIA data and Data analysis DIA datasets from GolgiTAG-IP, ControlTAG-IP and their whole-cell extracts were imported into the Spectronaut software suite (Version Rubin: 15.7.220308.50606: URL: https://biognosys.com/software/spectronaut/) (6) for library free search or direct DIA to create a search archive using Pulsar search algorithm.

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging.
Article Snippet: .. Mass spectrometry data analysis The resultingDIAmapswere analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys)withmodified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies15,16. ..

Mass Spectrometry:

Article Title: SARS-CoV-2 hijacks p38β/MAPK11 to promote virus replication
Article Snippet: .. All raw mass spectrometry data generated in this study were analyzed by the Spectronaut software suite (Biognosys) ( ). .. DDA-MS data were analyzed to build a spectral library by searching against a protein sequence database composed of SwissProt human sequences (downloaded on 10 October 10, 2019) and SARS-CoV-2 strain USA/WA1/2020 sequences using Biognosys factory settings, which considered a static modification for cysteine carbamidomethylation and variable modifications for methionine oxidation and protein N -terminal acetylation.

Article Title: Antibodies to connective tissue growth factor (CTGF) and uses thereof
Article Snippet: .. MS1 resolution is set to 120,000, AGC target to 2E6 with a maximum injection time of 60 ms. MS2 resolution is set to 15,000, AGC target to 2E6 with a maximum injection time of 22 ms. Mass spectrometry raw data are processed within the Spectronaut software suite (v17.4, Biognosys AG, Schlieren, Switzerland) utilizing the directDIA search algorithm with standard settings. ..

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging.
Article Snippet: .. Mass spectrometry data analysis The resultingDIAmapswere analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys)withmodified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies. ..

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging.
Article Snippet: .. Mass spectrometry data analysis The resultingDIAmapswere analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys)withmodified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies15,16. ..

Generated:

Article Title: SARS-CoV-2 hijacks p38β/MAPK11 to promote virus replication
Article Snippet: .. All raw mass spectrometry data generated in this study were analyzed by the Spectronaut software suite (Biognosys) ( ). .. DDA-MS data were analyzed to build a spectral library by searching against a protein sequence database composed of SwissProt human sequences (downloaded on 10 October 10, 2019) and SARS-CoV-2 strain USA/WA1/2020 sequences using Biognosys factory settings, which considered a static modification for cysteine carbamidomethylation and variable modifications for methionine oxidation and protein N -terminal acetylation.

Injection:

Article Title: Antibodies to connective tissue growth factor (CTGF) and uses thereof
Article Snippet: .. MS1 resolution is set to 120,000, AGC target to 2E6 with a maximum injection time of 60 ms. MS2 resolution is set to 15,000, AGC target to 2E6 with a maximum injection time of 22 ms. Mass spectrometry raw data are processed within the Spectronaut software suite (v17.4, Biognosys AG, Schlieren, Switzerland) utilizing the directDIA search algorithm with standard settings. ..

Data-independent acquisition:

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging.
Article Snippet: .. Mass spectrometry data analysis The resultingDIAmapswere analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys)withmodified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies. ..

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging
Article Snippet: .. The resulting DIA maps were analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys) with modified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies , . ..

Article Title: Golgi-IP, a tool for multimodal analysis of Golgi molecular content
Article Snippet: In addition, these data were also searched with the Pulsar search algorithm using Biognosys software suite to construct a hybrid library. .. Database search of DIA data and Data analysis DIA datasets from GolgiTAG-IP, ControlTAG-IP and their whole-cell extracts were imported into the Spectronaut software suite (Version Rubin: 15.7.220308.50606: URL: https://biognosys.com/software/spectronaut/) (6) for library free search or direct DIA to create a search archive using Pulsar search algorithm. .. Database search of DIA data and Data analysis DIA datasets from GolgiTAG-IP, ControlTAG-IP and their whole-cell extracts were imported into the Spectronaut software suite (Version Rubin: 15.7.220308.50606: URL: https://biognosys.com/software/spectronaut/) (6) for library free search or direct DIA to create a search archive using Pulsar search algorithm.

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging.
Article Snippet: .. Mass spectrometry data analysis The resultingDIAmapswere analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys)withmodified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies15,16. ..

Data-dependent acquisition:

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging.
Article Snippet: .. Mass spectrometry data analysis The resultingDIAmapswere analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys)withmodified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies. ..

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging
Article Snippet: .. The resulting DIA maps were analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys) with modified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies , . ..

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging.
Article Snippet: .. Mass spectrometry data analysis The resultingDIAmapswere analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys)withmodified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies15,16. ..

Modification:

Article Title: Unveiling proteomic and peptide-level modifications in cerebrospinal fluid and plasma in normal cognitive aging
Article Snippet: .. The resulting DIA maps were analyzed using the Spectronaut software suite (version 18.4.231017.55695, Biognosys) with modified default settings using a hybrid library comprising all DIA and DDA runs obtained from previous studies , . ..



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